PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01243.1.g00140.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 105aa    MW: 11592.6 Da    PI: 10.8965
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01243.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF983.8e-31959151
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Zpz_sc01243.1.g00140.1.am.mk  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59
                                  79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.777161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-29367IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-32323IPR002100Transcription factor, MADS-box
CDDcd002651.85E-38359No hitNo description
PfamPF003198.0E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MVRGKTELKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASA  60
ARCVSRLVSL PHESADCKSI RTPFRSVSNS RSPLLPVVAT DALVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-18174178Myocyte-specific enhancer factor 2B
1tqe_Q6e-18174178Myocyte-specific enhancer factor 2B
1tqe_R6e-18174178Myocyte-specific enhancer factor 2B
1tqe_S6e-18174178Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648233e-77BT064823.1 Zea mays full-length cDNA clone ZM_BFb0180I10 mRNA, complete cds.
GenBankEU9610133e-77EU961013.1 Zea mays clone 230445 mRNA sequence.
GenBankKJ7269283e-77KJ726928.1 Zea mays clone pUT3473 MADS transcription factor (MADS76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168784.14e-36uncharacterized protein LOC100382583
RefseqXP_008658827.14e-36PREDICTED: uncharacterized protein LOC100382583 isoform X1
SwissprotP0C5B29e-37MAD56_ORYSJ; MADS-box transcription factor 56
TrEMBLC0P9544e-36C0P954_MAIZE; MADS transcription factor
TrEMBLK7VLA75e-36K7VLA7_MAIZE; Putative MADS-box transcription factor family protein
STRINGGRMZM2G070034_P011e-35(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.16e-37AGAMOUS-like 14